BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB002F06LP1|AL424997
(805 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig776 979 0.0
>3x_Contig776
Length = 3521
Score = 979 bits (483), Expect = 0.0
Identities = 526/547 (96%), Gaps = 3/547 (0%)
Strand = Plus / Minus
Query: 1 tggaaacatctctcaaagtgatgttgwtagcccattctaattcgtcgaaagaratttcag 60
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 629 tggaaacatctctcaaagtgatgttgttagcccattctaattcgtcgaaagagatttcag 570
Query: 61 cagattgtccgttgaaagtaatttccaaagcagtcttcacgtgcttcaacttagagtcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 cagattgtccgttgaaagtaatttccaaagcagtcttcacgtgcttcaacttagagtcaa 510
Query: 121 tggaagctaaacctttgttgttgttgacattgaagacttcaatttcgtctaaatcttcga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tggaagctaaacctttgttgttgttgacattgaagacttcaatttcgtctaaatcttcga 450
Query: 181 aaccagcgatagattccaaagcagtgtcagcaatggtaatttgcttagcagaagtcaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aaccagcgatagattccaaagcagtgtcagcaatggtaatttgcttagcagaagtcaact 390
Query: 241 tagtgataatattggaaacagctggtaaagtaacgaaactgatggtgtcaacctcttcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tagtgataatattggaaacagctggtaaagtaacgaaactgatggtgtcaacctcttcca 330
Query: 301 aagaaccgaaagaagcggtgtccaatacagtcaattgattcaaagtcaaagtttcagaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aagaaccgaaagaagcggtgtccaatacagtcaattgattcaaagtcaaagtttcagaga 270
Query: 361 tcttcttcaaagagtcagcggagtaaakaagtcattttagtggcattcttaattttyawa 420
||||||||||||||||||||||| ||| ||||||||| |||||||||||||||| | | |
Sbjct: 269 tcttcttcaaagagtcagcggag-aaagaagtcatttgagtggcattcttaattgtcaaa 211
Query: 421 gaaccgtcaatttyttckwcaccagccaakgywgyggaagctakgttcaccggtcaagac 480
||||||||||||| ||| |||||||||| | | |||||||| | ||||||||||||||
Sbjct: 210 gaaccgtcaatttcttcgacaccagccaaggcagcggaagctagg-tcaccggtcaagac 152
Query: 481 caagtcaccgacaatggtagaacaaccagagtagctgtccaaatcakyttgaka-ggaag 539
|||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||
Sbjct: 151 caagtcaccgacaatggtagaacaaccagagtagctgtccaaatcagcttgagagggaag 92
Query: 540 cagtggc 546
|||||||
Sbjct: 91 cagtggc 85
Score = 99.8 bits (49), Expect = 7e-21
Identities = 54/57 (94%)
Strand = Plus / Minus
Query: 582 aacactttgaktwgagttggctattgataaaaaaataaatgtctgttagtattatta 638
|||||||||| | |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 57 aacactttgagtagagttggctattgataaaaaaagaaatgtctgttagtattatta 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.41 0.715 1.33
Gapped
Lambda K H
1.41 0.715 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6909
Number of Sequences: 1807
Number of extensions: 6909
Number of successful extensions: 156
Number of sequences better than 1.0e-20: 1
length of query: 805
length of database: 10,358,551
effective HSP length: 16
effective length of query: 789
effective length of database: 10,329,639
effective search space: 8150085171
effective search space used: 8150085171
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.4 bits)
S1: 12 (24.8 bits)
S2: 49 (99.8 bits)